YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VIT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEEDKITR ISIEPEKQTL LDHHTEKHFT AGEIVRDIII GVSDGLTVPF ALAAGLSGAN  60
   61 ASSSIVLTAG IAEVAAGAIS MGLGGYLAAK SEEDHYAREM KREQEEIVAV PETEAAEVAE 120
  121 ILAQYGIEPH EYSPVVNALR KNPQAWLDFM MRFELGLEKP DPKRALQSAF TIAIAYVLGG 180
  181 FIPLLPYMLI PHAMDAVVAS VVITLFALFI FGYAKGHFTG SKPLRSAFET AFIGAIASAA 240
  241 AFCLAKVVQH

Type	Start	End	Confidence
Cytoplasmic	1	37	0.89
Transmembrane Helix	38	57	0.82
Non-Cytoplasmic	58	64	0.69
Transmembrane Helix	65	88	0.84
Cytoplasmic	89	167	0.97
Transmembrane Helix	168	189	0.89
Non-Cytoplasmic	190	195	0.71
Transmembrane Helix	196	214	0.96
Cytoplasmic	215	226	0.79
Transmembrane Helix	227	248	0.87
Non-Cytoplasmic	249	250	0.85