YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PME10_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGVTIHNFC YSYFKVCLLV MSLAYGSAEW DGSSSQIAKT IIVNPNDARY FKTVQSAIDS  60
   61 IPLQNQDWIR ILISNGIYSE KVTIPRGKGY IYMQGGGIEK TIIAYGDHQL TNTSATFTSY 120
  121 PSNIIITGIT FKNKYNIASS SSPTKPAVAA MMLGDKYAII DSSFDGFQDT LYDDYGRHYY 180
  181 KRCVISGGID FIFGGAQSIF EGCTLKLRVG IYPPNEVYGT ITAQGRDSPT DKGGFVFKDC 240
  241 TVMGSGKALL GRAWKSYSRV IFYRSMFSDN ILPIGWDAWK AKGQEGHITF VEFGCTGVGA 300
  301 DTSKRVPWLT KASEKDVLQF TNLTFIDEEG WLSRLPIKF

Type	Start	End	Confidence
Signal Peptide	1	28	0.57
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	339	0.99