YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDSB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCSSSSSS QKTWIVNGIL AGTAIAAAIG ARAYLGRSKK FRSRVVGIIP ARYASSRFEG  60
   61 KPLVQILGKP MIQRTWERSK LATTLDHIVV ATDDERIAEC CRGFGADVIM TSESCRNGTE 120
  121 RCNEALEKLE KKYDVVVNIQ GDEPLIEPEI IDGVVKALQV TPDAVFSTAV TSLKPEDGLD 180
  181 PNRVKCVVDN RGYAIYFSRG LIPYNKSGKV NPDFPYMLHL GIQSFDSKFL KVYSELQPTP 240
  241 LQQEEDLEQL KVLENGYKMK VIKVDHEAHG VDTPDDVEKI ESLMRERNMS

Type	Start	End	Confidence
Cytoplasmic	1	12	0.36
Transmembrane Helix	13	34	0.60
Non-Cytoplasmic	35	290	0.72