YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCP6_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANDYISFVF KSLLLLIHLV FLGQHHVDSA SVVKSLPGFE GPLPFELETG YIGVGEEEEV  60
   61 QLFYYFIKSE RNPKEDPLLL WLTGGPGCSA ISGLLYENGP LTMKLDVYNG TLPSLVSTTY 120
  121 SWTKNSSMIF LDQPVGTGFS YSRTELFNKP SDTGEAKRIH EFLQKWLGKH QEFSSNPFYV 180
  181 GGDSYSGITV PATVQEISKG NYQCCKPPIN LQGYMLGNPI TDSKIDGNSQ IPYAHGMALI 240
  241 SDELYESLKR ICKGEYEHVD PYNTECLKLL EEFNECTSKL YRSHILYPLC EMTNPDCYIY 300
  301 RYSLSHYWVN DETVRKALQI NKESIREWKR CDWSKPYTKD IISSVPYHMN NSINGYRSLI 360
  361 FSGDHDFEVP LIGTQVWIKS LNYAIVDKWR PWMINNQVAG YTRTYANKMT FATVKGGGHT 420
  421 AEYKPDETFI MFQRWINGQA L

Type	Start	End	Confidence
Signal Peptide	1	29	0.91
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	441	0.99