YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASD_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKMGEVWTN TGSALASLVF IYTIFERFFP YRLREHFEPL AQSLIGFIYP YIQITFHEYS  60
   61 GERFKRSDVY DAIQSYLSKD SSSRAKKLTA NTIKGNKSII LSMDDHEEIT DEFQGVKVWW 120
  121 QSKKHQSESR AISFYPKADE SRFYMLKFHR RDREVITKKY LNHVISEGKT IEVKNRERKL 180
  181 YSNNPSQNWS GYKQTKWSHV TFEHPATFDT LAMEYKKKEE IKNDLIKFSN SKDYYKKIGK 240
  241 AWKRGYLLFG PPGTGKSTMI AAMANLLEYD VYDLELTTVK DNTELRRLLI ETSGKSIIVI 300
  301 EDIDCSLDLT GQRKQKKDEE EDEDETSPIE KQMKKDQGEN KGSKVTLSGL LNFIDGLWSA 360
  361 CGGERIIVFT TNFIDKLDPA LIRKGRMDKH IEMSYCGFEA FKVLANNYLD AKEEDDNELF 420
  421 DEIKRLLEVE EIKMTPADVG ENLLKKSEVE TKEICLKRLI EALKEEKEEA KRRIEDEEKK 480
  481 KKEEEEIKRK KREEKKIKKE EKEEKEENET TMKD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.72
Transmembrane Helix	7	25	0.80
Non-Cytoplasmic	26	514	0.95