YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.81
Transmembrane Helix	39	61	0.87
Non-Cytoplasmic	62	68	0.66
Transmembrane Helix	69	89	0.70
Cytoplasmic	90	113	0.60
Transmembrane Helix	114	136	0.67
Non-Cytoplasmic	137	146	0.37
Transmembrane Helix	147	168	0.91
Cytoplasmic	169	208	0.53
Transmembrane Helix	209	230	0.81
Non-Cytoplasmic	231	244	0.61
Transmembrane Helix	245	269	0.76
Cytoplasmic	270	280	0.53
Transmembrane Helix	281	304	0.82
Non-Cytoplasmic	305	356	0.77
Transmembrane Helix	357	378	0.91
Cytoplasmic	379	412	0.80
Transmembrane Helix	413	434	0.95
Non-Cytoplasmic	435	441	0.70
Transmembrane Helix	442	464	0.92
Cytoplasmic	465	524	0.83
Transmembrane Helix	525	547	0.89
Non-Cytoplasmic	548	598	0.79
Transmembrane Helix	599	620	0.89
Cytoplasmic	621	630	0.57
Transmembrane Helix	631	663	0.73
Non-Cytoplasmic	664	675	0.52
Transmembrane Helix	676	697	0.91
Cytoplasmic	698	733	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDFTDTISE SECDDEISIV PQVELTVPKT DDPTSPTVTF RMWVLGITAC VLLSFLNQFF  60
   61 WYRTNPLTIS SVSAQIAVVP IGHLMAKVLP TRRFFEGTRW SFTMNPGPFS TKEHVLITVF 120
  121 ANSGSGAVYA THILSAVKLY YKRRLDFLPA LLVMITTQVL GFGWAGLYRK HLVEPGEMWW 180
  181 PSNLVQVSLF RALHEKENKS KWGISRNQFF VITLITSFSY YLLPGYLFTV LTTVSWLCWI 240
  241 SPKSILVNQL GSGSAGLGIG SFGLDWSTIA SYLGSPLASP FFASANIAAG FFLVMYVITP 300
  301 LCYYLDLYNA KTFPIYSGKL FVASGKEYKV TSIIDANFRL DRQAYAETGP VHMSTFFAVT 360
  361 YGLGFATLSA SIFHVLIFNG KDLWTQTRGA FGKNKKMDIH TKIMKRNYKE VPLWWFLSIF 420
  421 AVNLAVIVFI CIYYKTQIQL PWWGAFLACL IAIFFTPLVG VIMATTNQAP GLNIITEYII 480
  481 GYAYPERPVA NICFKTYGYI SMSQSLTFLS DLKLGTYMKI PPRTMFMAQV VGTLVAVIAY 540
  541 AGTAWWLMAE IPNLCDTNLL PPGSQWTCPS DRVFFDASVI WGLVGPRRMF GDLGEYSNIN 600
  601 WFFVGGAIAP ALVYLASRLF PNKKWISDIH IPVLIGATAI MPPASAVNFT SWLVMAFVFG 660
  661 HFVFKYRREW WQRYNYVLSG GMDAGTGFMS VLLFLALQRS EIAIDWWGNS GEGCPVAKCP 720
  721 TAKGVVVHGC PVF