YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATCA1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIMMMIKLC FFSMSLICIA PADAQTEGVV FGYKGKNGPN QWGHLNPHFT TCAVGKLQSP  60
   61 IDIQRRQIFY NHKLNSIHRE YYFTNATLVN HVCNVAMFFG EGAGDVIIEN KNYTLLQMHW 120
  121 HTPSEHHLHG VQYAAELHMV HQAKDGSFAV VASLFKIGTE EPFLSQMKEK LVKLKEERLK 180
  181 GNHTAQVEVG RIDTRHIERK TRKYYRYIGS LTTPPCSENV SWTILGKVRS MSKEQVELLR 240
  241 SPLDTSFKNN SRPCQPLNGR RVEMFHDHER VDKKETGNKK KKPN

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	284	0.99