YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIP_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNCERFANL ALAGLTLAPL VVRVNPNLNV ILTACITVYV GCFRSVKDTP PTETMSKEHA  60
   61 MRFPLVGSAM LLSLFLLFKF LSKDLVNAVL TAYFFVLGIV ALSATLLPAI RRFLPNPWND 120
  121 NLIVWRFPYF KSLEVEFTKS QVVAGIPGTF FCAWYAWKKH WLANNILGLS FCIQGIEMLS 180
  181 LGSFKTGAIL LAGLFFYDIF WVFFTPVMVS VAKSFDAPIK LLFPTGDALR PYSMLGLGDI 240
  241 VIPGIFVALA LRFDVSRRRQ PQYFTSAFIG YAVGVILTIV VMNWFQAAQP ALLYIVPAVI 300
  301 GFLASHCIWN GDIKPLLAFD ESKTEEATTD ESKTSEEVNK AHDE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.52
Transmembrane Helix	21	43	0.50
Non-Cytoplasmic	44	59	0.50
Transmembrane Helix	60	81	0.90
Cytoplasmic	82	88	0.46
Transmembrane Helix	89	110	0.92
Non-Cytoplasmic	111	136	0.50
Transmembrane Helix	137	157	0.58
Cytoplasmic	158	177	0.55
Transmembrane Helix	178	205	0.71
Non-Cytoplasmic	206	231	0.82
Transmembrane Helix	232	253	0.90
Cytoplasmic	254	262	0.86
Transmembrane Helix	263	284	0.91
Non-Cytoplasmic	285	290	0.74
Transmembrane Helix	291	309	0.95
Cytoplasmic	310	344	0.94