YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	84	0.98
Transmembrane Helix	85	107	0.90
Non-Cytoplasmic	108	118	0.74
Transmembrane Helix	119	140	0.88
Cytoplasmic	141	157	0.86
Transmembrane Helix	158	181	0.87
Non-Cytoplasmic	182	212	0.90
Transmembrane Helix	213	232	0.86
Cytoplasmic	233	238	0.81
Transmembrane Helix	239	261	0.91
Non-Cytoplasmic	262	272	0.79
Transmembrane Helix	273	290	0.85
Cytoplasmic	291	310	0.76
Transmembrane Helix	311	332	0.93
Non-Cytoplasmic	333	359	0.84
Transmembrane Helix	360	380	0.84
Cytoplasmic	381	405	0.81
Transmembrane Helix	406	426	0.90
Non-Cytoplasmic	427	433	0.74
Transmembrane Helix	434	457	0.87
Cytoplasmic	458	464	0.95
Transmembrane Helix	465	487	0.92
Non-Cytoplasmic	488	493	0.87
Transmembrane Helix	494	514	0.96
Cytoplasmic	515	521	0.88
Transmembrane Helix	522	543	0.87
Non-Cytoplasmic	544	549	0.68
Transmembrane Helix	550	571	0.87
Cytoplasmic	572	590	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPASMEEAH QLESRSDDLS QRRSYWRWRK QDFFPEFSFQ SFSTYKSALS ATCPRLADRL  60
   61 LSRSSDAYEL DAARRESENP MRRCLTWWDL LWLSFGSVVG SGVFVITGQE ARVGAGPAVV 120
  121 LSYAISGVSA LLSVLCYAEF GVEIPVAGGS FSYLRVELGD FIAFIAAGNI LLEAMVGAAG 180
  181 LGRSWSSYLA SLVKNDSDYF RIKVDSFAKG FDLLDPVAVA VLLVANGIAM TGTKRTSWLN 240
  241 LITSMVTVCI IVFIVVVGFT HSKTSNLVPF FPYGAKGVVQ SAAVVYWSYT GFDMVANMAE 300
  301 ETEKPSRDIP IGLVGSMSMI TVVYCLMALA LTMMVKYTEI DANAAYSVAF AQIGMKWAKY 360
  361 LVGICALKGM TTSLLVGSLG QARYTTQIAR SHMIPPWFAL VHPKTGTPIY ATLLVTILSS 420
  421 IISFFTSLEV LSSVFSFATL FIFMLVAVAL LVRRYYVKDV TPEAGLLKFL GFLFLIIASS 480
  481 IGVSALWNSG VKGWIAYTVT GVIWFIGTLG LALLPKYRVP KVWGVPLVPW LPSFSIAMNL 540
  541 FLIGSLGYVA FLRFIICTMV MLLYYLFVGL HATYDVAHQP LEEAKFEGER