YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YUC9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENMFRLMAS EEYFSERRCV WVNGPVIVGA GPSGLATAAC LHDQGVPFVV VERSDCIASL  60
   61 WQKRTYDRLK LHLPKKFCQL PKMPFPDHYP EYPTKRQFID YLESYANRFD IKPEFNKSVE 120
  121 SARFDETSGL WRVRTTSDGE EMEYICRWLV VATGENAERV VPEINGLMTE FDGEVIHACE 180
  181 YKSGEKFRGK RVLVVGCGNS GMEVSLDLAN HNAITSMVVR SSVHVLPREI MGKSTFGISV 240
  241 MMMKWLPLWL VDKLLLILSW LVLGSLSNYG LKRPDIGPME LKSMTGKTPV LDIGALEKIK 300
  301 SGDVEIVPAI KQFSRHHVEL VDGQKLDIDA VVLATGYRSN VPSWLQESEF FSKNGFPKSP 360
  361 FPNAWKGKSG LYAAGFTRKG LAGASVDAVN IAQDIGNVWR EETKRQKMRR NVGHRRCISV 420
  421 A

Type	Start	End	Confidence
Cytoplasmic	1	19	0.72
Transmembrane Helix	20	39	0.54
Non-Cytoplasmic	40	421	0.79