YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5804774, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.88
Transmembrane Helix	49	69	0.93
Non-Cytoplasmic	70	80	0.74
Transmembrane Helix	81	101	0.90
Cytoplasmic	102	127	0.81
Transmembrane Helix	128	150	0.89
Non-Cytoplasmic	151	158	0.78
Transmembrane Helix	159	178	0.90
Cytoplasmic	179	189	0.65
Transmembrane Helix	190	211	0.85
Non-Cytoplasmic	212	229	0.71
Transmembrane Helix	230	250	0.80
Cytoplasmic	251	256	0.59
Transmembrane Helix	257	277	0.84
Non-Cytoplasmic	278	285	0.71
Transmembrane Helix	286	309	0.86
Cytoplasmic	310	315	0.68
Transmembrane Helix	316	337	0.84
Non-Cytoplasmic	338	342	0.65
Transmembrane Helix	343	362	0.80
Cytoplasmic	363	403	0.90
Transmembrane Helix	404	427	0.91
Non-Cytoplasmic	428	431	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARKRASSI SIPNKPDPSE PNSAPSEQKM TRKTVSASGE EFRLAPPKLG VIFVISTLLC  60
   61 SLYLYLLCFH YKVDNELKRS ILINAGLSLV GFFVTLKMIP VTARYVLRRN MFGFDINKRG 120
  121 TPQGDIKVPE SLGIVVGIVF LIVAIIFQYF NFTEDSNWLV EYNAALASIC FMILLGFVDD 180
  181 VLDVPWRVKL VLPSFATLPL LMAYAGHTTI VIPKPLVAYI GLEVLNLGRI YKLYMGLLAV 240
  241 FCTNSINIHA GLNGLEIGQT VVIAAAILIH NVMQIGASVD PEYHQAHAFS IFLTQPLMAT 300
  301 SLAMLAYNWY PSSVFVGDTY TVFAGMTMAV VGILGHFSET LLIFFLPQVL NFLLSLPQLA 360
  361 GIVKCPRHRL PRYDPATGLL TGTKDGTLVN VYLRLFGPKS EKSLCIHLLV FQALACAFCF 420
  421 ILRHFLAGWY K