YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HSD4B_ARATH, HSD...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNNKIFNI LLPIVTVSFL LVFMPFSIFF KLLQFIRGCK ESEKVNGKVV IITGSSSGIG  60
   61 EHLAYEYARR GAYLTLVARR EDRLQVVADR CRKLGSPDVA VVRGDVSVIK DCKRFVQETI 120
  121 SRFGRLDHLV NNAGIAEAKF FEDYSEISDV LPIVNTNFWG PVYATHFAIP HLKKTKGKII 180
  181 AVASPAGWSG VPRMSIYAAS KAAMINFYET LRIELHPEVG VTIVFPGLIE NGNTNPDLLA 240
  241 EKQDWSQVVT IESAAECAKA VVNGICRGKT FVAEPSWVRV LFWLSAICPE LLISKPKRN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.81
Transmembrane Helix	7	29	0.89
Non-Cytoplasmic	30	299	0.83