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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT21_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDESSLVRFV FLLCLVSSSV FCLAESDQNA TVSSAVYIVT LKDRPSVHFS GRESSDSKHS  60
   61 LTATSSQIYR TLNRSASIIR VHDSLLRNVL RKENYLKLYS YHYLINGFSA VLTRKQADRL 120
  121 AAREEVENVV LDFLVEKATT HTPQFLGLPR GAWLRDGGSE YAGEGVVIGF IDTGIDPTHP 180
  181 SFSDKISGHT YSVPPHFTGV CEVTIGFPPG SCNRKLIGAR HFAESALSRG VLNSSQDDAS 240
  241 PFDGEGHGTH TASVAAGNHG IPVVVAGHRL GNASGMAPRA HIAIYKALYK RFGGFAADII 300
  301 AAIDQAAQDG VDIINLSITP NRRPPGIATF FNPIDMALLS AVKAGIFVVQ AAGNTGPAPK 360
  361 SMSSFSPWIF TVGATSHDRV YSNSIILGNN VTIPGVGLAS GTRIMHKLVL ATHALRNGTT 420
  421 VMDAIYVGEC QDSSSFDQKL VQGKILVCSY TVRFILGVST IKQALLTAKN LTAAGLVFYI 480
  481 DPSATGFQMT SSPMDIPGIL ISSPQDSQAL LRYYNSSLLR ENGSGKIVGS ASVAKIVGGM 540
  541 RPTYGITAPK VMYFSARGPD PEDDSFVDAD IMKPNLVAPG NAIWGAWSPL GIGTNDFQGE 600
  601 RFAMESGTSM SAPHVTGIAA LIKQKFPHFT PAAIASALST TASLSDRKGE HIMAQRTVLN 660
  661 PDISQSPATP FDMGSGFVNA TAALDPGLIF DIGYNEYMKF LCGINGSSPV VLNYTGESCS 720
  721 SYNSSLAASD LNLPSVTIAK LVGTRAVLRW VTNIATTATN ETYIVGWMAP DSVSVKVSPA 780
  781 KFTIGNGQTR VLSLVFRAMK NVSMASFGRI GLFGDRGHVV NIPVAVIYKI AV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle