YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHTL8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.94
Transmembrane Helix	103	124	0.80
Non-Cytoplasmic	125	129	0.50
Transmembrane Helix	130	151	0.74
Cytoplasmic	152	173	0.76
Transmembrane Helix	174	197	0.90
Non-Cytoplasmic	198	204	0.70
Transmembrane Helix	205	228	0.57
Cytoplasmic	229	243	0.53
Transmembrane Helix	244	265	0.88
Non-Cytoplasmic	266	285	0.79
Transmembrane Helix	286	308	0.84
Cytoplasmic	309	333	0.87
Transmembrane Helix	334	355	0.92
Non-Cytoplasmic	356	377	0.84
Transmembrane Helix	378	399	0.91
Cytoplasmic	400	419	0.89
Transmembrane Helix	420	443	0.82
Non-Cytoplasmic	444	447	0.62
Transmembrane Helix	448	470	0.82
Cytoplasmic	471	479	0.79
Transmembrane Helix	480	505	0.85
Non-Cytoplasmic	506	519	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDERPETELI SIPATPRVST PEILTPSGQR SPRPATKPSS ATWTPTSFIS PRFLSPIGTP  60
   61 MKRVLVNMKG YLEEVGHLTK LNPQDAWLPI TESRNGNAHY AAFHNLNAGV GFQALVLPVA 120
  121 FAFLGWSWGI LSLTIAYCWQ LYTLWILVQL HEAVPGKRYN RYVELAQAAF GERLGVWLAL 180
  181 FPTVYLSAGT ATALILIGGE TMKLFFQIVC GPLCTSNPLT TVEWYLVFTS LCIVLSQLPN 240
  241 LNSIAGLSLI GAVTAITYST MVWVLSVSQP RPATISYEPL SMPSTSGSLF AVLNALGIIA 300
  301 FAFRGHNLVL EIQSTMPSTF KHPAHVPMWR GAKISYFLIA LCIFPISIGG FWAYGNLMPS 360
  361 GGMLAALYAF HIHDIPRGLL ATAFLLVVFS CLSSFQIYSM PAFDSFEAGY TSRTNKPCSI 420
  421 WVRSGFRVFF GFVSFFIGVA LPFLSSLAGL LGGLTLPVTF AYPCFMWVLI KKPAKYSFNW 480
  481 YFHWGLGWLG VAFSLAFSIG GIWSMVTNGL KLKFFKPPN