YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTPA1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRRSKVCG ETACGFSTSS SDAKKRAASM RKLCFVVVLC LLFMSIEVVC GIKANSLAIL  60
   61 ADAAHLLTDV GAFAISMLSL WASSWEANPR QSYGFFRIEI LGTLVSIQLI WLLTGILVYE 120
  121 AVTRLVQETN DDVDGFFMVL VAAFGLVVNI IMIVVLGHDH GHGHDHGHSH DHGHSYGERA 180
  181 EQLLEKSKEI RNINVQGAYL HVLGDLIQSI GVMIGGGMIW YNPKWKVIDL ICTLFFSVIV 240
  241 LGTTIKMLRS ILEVLMESTP REIDARQLEK GLMEIEEVVD VHELHIWAIT VGKALFSCHV 300
  301 KVRPEAGDEM VLNKVIDYIW REYRISHVTI QIER

Type	Start	End	Confidence
Cytoplasmic	1	32	0.98
Transmembrane Helix	33	54	0.92
Non-Cytoplasmic	55	62	0.76
Transmembrane Helix	63	83	0.92
Cytoplasmic	84	94	0.85
Transmembrane Helix	95	118	0.84
Non-Cytoplasmic	119	135	0.87
Transmembrane Helix	136	157	0.93
Cytoplasmic	158	197	0.96
Transmembrane Helix	198	220	0.89
Non-Cytoplasmic	221	226	0.82
Transmembrane Helix	227	248	0.91
Cytoplasmic	249	334	0.96