YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UGAL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	31	0.88
Non-Cytoplasmic	32	37	0.85
Transmembrane Helix	38	58	0.92
Cytoplasmic	59	77	0.84
Transmembrane Helix	78	99	0.89
Non-Cytoplasmic	100	105	0.67
Transmembrane Helix	106	123	0.62
Cytoplasmic	124	128	0.62
Transmembrane Helix	129	148	0.86
Non-Cytoplasmic	149	153	0.46
Transmembrane Helix	154	174	0.82
Cytoplasmic	175	187	0.55
Transmembrane Helix	188	207	0.87
Non-Cytoplasmic	208	222	0.50
Transmembrane Helix	223	246	0.89
Cytoplasmic	247	251	0.55
Transmembrane Helix	252	274	0.75
Non-Cytoplasmic	275	279	0.56
Transmembrane Helix	280	299	0.93
Cytoplasmic	300	336	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEGSMFRSL LAILQWWGFN VTVIIMNKWI FQKLDFKFPL SVSCVHFICS SIGAYIVIKV  60
   61 LKLKPLIVVD PEDRWRRIFP MSFVFCINIV LGNVSLRYIP VSFMQTIKSF TPATTVVLQW 120
  121 LVWRKYFDWR IWASLVPIVG GILLTSVTEL SFNMFGFCAA LFGCLATSTK TILAESLLHG 180
  181 YKFDSINTVY YMAPFATMIL GIPALLLEGS GILSWFEAHP APWSALIIIL SSGVLAFCLN 240
  241 FSIFYVIHST TAVTFNVAGN LKVAVAVMVS WLIFRNPISY MNAVGCGITL VGCTFYGYVR 300
  301 HMLSQQTPGT PRTPRTPRSK MELLPLVNND KLEGKV