YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4581139, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	542	0.56
Transmembrane Helix	543	563	0.91
Cytoplasmic	564	577	0.44
Transmembrane Helix	578	602	0.83
Non-Cytoplasmic	603	619	0.44
Transmembrane Helix	620	649	0.73
Cytoplasmic	650	659	0.42
Transmembrane Helix	660	680	0.84
Non-Cytoplasmic	681	685	0.46
Transmembrane Helix	686	708	0.91
Cytoplasmic	709	716	0.46
Transmembrane Helix	717	733	0.31
Non-Cytoplasmic	734	770	0.63
Transmembrane Helix	771	795	0.91
Cytoplasmic	796	1192	0.71
Transmembrane Helix	1193	1215	0.88
Non-Cytoplasmic	1216	1228	0.68
Transmembrane Helix	1229	1252	0.83
Cytoplasmic	1253	1308	0.46
Transmembrane Helix	1309	1329	0.90
Non-Cytoplasmic	1330	1336	0.59
Transmembrane Helix	1337	1358	0.91
Cytoplasmic	1359	1366	0.73
Transmembrane Helix	1367	1385	0.78
Non-Cytoplasmic	1386	1422	0.89
Transmembrane Helix	1423	1442	0.95
Cytoplasmic	1443	1450	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGRDEDLVR TMSGRGSLGS TSHRSLAGAA SKSFRDVFAP PTDDVFGRSD RREEDDVELR  60
   61 WAALERLPTY DRLRKGMLPQ TMVNGKIGLE DVDVTNLAPK EKKHLMEMIL KFVEEDNEKF 120
  121 LRRLRERTDR VGIEVPKIEV RYENLSVEGD VRSASRALPT LFNVTLNTIE SILGLFHLLP 180
  181 SKKRKIEILK DISGIIKPSR MTLLLGPPSS GKTTLLQALA GKLDDTLQMS GRITYCGHEF 240
  241 REFVPQKTCA YISQHDLHFG EMTVRESLDF SGRCLGVGTR YQLLTELSRR EREAGIKPDP 300
  301 EIDAFMKSIA ISGQETSLVT DYVLKLLGLD ICADTLVGDV MRRGISGGQR KRLTTGEMLV 360
  361 GPATALFMDE ISTGLDSSTT FQICKFMRQL VHIADVTMVI SLLQPAPETF ELFDDIILLS 420
  421 EGQIVYQGSR DNVLEFFEYM GFKCPERKGI ADFLQEVTSK KDQEQYWNRR EHPYSYVSVH 480
  481 DFSSGFNSFH AGQQLASEFR VPYDKAKTHP AALVTQKYGI SNKDLFKACF DREWLLMKRN 540
  541 SFVYVFKTVQ ITIMSLIAMT VYFRTEMHVG TVQDGQKFYG ALFFSLINLM FNGMAELAFT 600
  601 VMRLPVFFKQ RDFLFYPPWA FALPGFLLKI PLSLIESVIW IALTYYTIGF APSAARFFRQ 660
  661 LLAYFCVNQM ALSLFRFLGA LGRTEVIANS GGTLALLVVF VLGGFIISKD DIPSWLTWCY 720
  721 YTSPMMYGQT ALVINEFLDE RWGSPNNDTR INAKTVGEVL LKSRGFFTEP YWFWICIGAL 780
  781 LGFTVLFNFC YIIALMYLNP LGNSKATTVV EEGKDKHKGS HSGTGVELTS TSSHGPKKGM 840
  841 VLPFQPLSLA FNNVNYYVDM PAEMKAQGVE GDRLQLLRDV GGAFRPGVLT ALVGVSGAGK 900
  901 TTLMDVLAGR KTGGYVEGSI NISGYPKNQA TFARVSGYCE QNDIHSPHVT VYESLIYSAW 960
  961 LRLSADIDTK TREMFVEEVM ELVELKPLRN SIVGLPGVDG LSTEQRKRLT IAVELVANPS1020
 1021 IIFMDEPTSG LDARAAAIVM RTVRNTVDTG RTVVCTIHQP SIDIFESFDE LLLMKRGGQV1080
 1081 IYAGTLGHHS QKLVEYFEAI EGVPKIKDGY NPATWMLDVT TPSMESQMSV DFAQIFVNSS1140
 1141 VNRRNQELIK ELSTPPPGSN DLYFRTKYAQ PFSTQTKACF WKMYWSNWRY PQYNAIRFLM1200
 1201 TVVIGVLFGL LFWQTGTKIE KEQDLNNFFG AMYAAVLFLG ATNAATVQPA VAIERTVFYR1260
 1261 EKAAGMYSAI PYAISQVAVE IMYNTIQTGV YTLILYSMIG YDWTVVKFFW FYYYMLTCFV1320
 1321 YFTLYGMMLV ALTPNYQIAG ICLSFFLSFW NLFSGFLIPR PQIPIWWRWY YWASPVAWTL1380
 1381 YGIITSQVGD RDSIVHITGV GDMSLKTLLK NGFGFDYDFL PVVAVVHIAW ILIFLFAFAY1440
 1441 GIKFLNFQRR