YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUC7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	53	0.85
Non-Cytoplasmic	54	67	0.75
Transmembrane Helix	68	88	0.93
Cytoplasmic	89	101	0.88
Transmembrane Helix	102	121	0.96
Non-Cytoplasmic	122	138	0.84
Transmembrane Helix	139	157	0.90
Cytoplasmic	158	178	0.87
Transmembrane Helix	179	199	0.93
Non-Cytoplasmic	200	223	0.85
Transmembrane Helix	224	244	0.92
Cytoplasmic	245	276	0.96
Transmembrane Helix	277	297	0.91
Non-Cytoplasmic	298	324	0.96
Transmembrane Helix	325	346	0.90
Cytoplasmic	347	358	0.80
Transmembrane Helix	359	378	0.95
Non-Cytoplasmic	379	399	0.90
Transmembrane Helix	400	424	0.87
Cytoplasmic	425	438	0.77
Transmembrane Helix	439	460	0.89
Non-Cytoplasmic	461	468	0.81
Transmembrane Helix	469	490	0.93
Cytoplasmic	491	491	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLQANKDE TTVDRQSSSS VDLDGPSPLR KMISVASIAA GIQFGWALQL SLLTPYVQLL  60
   61 GVPHKWPSFI WLCGPVSGLL VQPSVGYFSD RCTSRFGRRR PFIATGALLV AVSVVLIGYA 120
  121 ADFGHSMGDK IDKPVKMRAV VIFALGFWIL DVANNTLQGP CRAFLGDLAA GDAQKTRTAN 180
  181 AFFSFFMAVG NVLGYAAGSY TNLYKIFPFT MTKACDIYCA NLKSCFFLSI TLLLVVTIIA 240
  241 LWYVEDKQWS PKADSDNEKT PFFGEIFGAF KVMKRPMWML LIVTALNWIA WFPFLLYDTD 300
  301 WMGREVYGGD SKGDDKMKKL YNQGIHVGAL GLMLNSIVLG VMSLGIEGIS RKMGGAKRLW 360
  361 GAVNIILAVC LAMTVLVTKK AEEHRRIAGP MALPTDGIRA GALTLFALLG IPLAITFSIP 420
  421 FALASIISSS SGAGQRLSLG VLNMAIVIPQ MIVSFGVGPI DALFGDGNLP GFVVGAIAAA 480
  481 VSSIVAFTVL P