YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.86
Transmembrane Helix	45	64	0.66
Non-Cytoplasmic	65	78	0.63
Transmembrane Helix	79	99	0.85
Cytoplasmic	100	107	0.74
Transmembrane Helix	108	130	0.90
Non-Cytoplasmic	131	144	0.83
Transmembrane Helix	145	164	0.87
Cytoplasmic	165	191	0.96
Transmembrane Helix	192	214	0.92
Non-Cytoplasmic	215	219	0.91
Transmembrane Helix	220	241	0.94
Cytoplasmic	242	322	0.98
Transmembrane Helix	323	344	0.87
Non-Cytoplasmic	345	366	0.89
Transmembrane Helix	367	388	0.85
Cytoplasmic	389	403	0.91
Transmembrane Helix	404	425	0.89
Non-Cytoplasmic	426	452	0.90
Transmembrane Helix	453	476	0.81
Cytoplasmic	477	487	0.88
Transmembrane Helix	488	512	0.89
Non-Cytoplasmic	513	532	0.95
Transmembrane Helix	533	557	0.87
Cytoplasmic	558	564	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIAEEEAAL IEDSVSDSVD HRGLPAGKSS TGGWRSAWYI IGVEVGERFA YFGIGSNLIT  60
   61 YLTGPLGQST ATAAVNVNTW SGTASILPVL GAFIADAYLG RYRTIVVASL IYILGLGLLT 120
  121 LSSILILMGL SEQRQHNRNA SAKPFFWVNI LFFCSLYLVA IGQGGHKPCV QAFGADQFDV 180
  181 GDPKERISRG SFFNWWFLSL SAGITLSIIV VVYVQDNVNW ALGFGIPCLF MVMALALFLF 240
  241 GRKTYRYPRG DREGKNNAFA RIGRVFLVAF KNRKLKLTHS GQLEVGSYKK CKGQLEFLAK 300
  301 ALLPGEGGVE PCSSRDVEDA MALVRLIPIW ITSVVSTIPY AQYATFFTKQ GVTVDRKILP 360
  361 GFEIPPASFQ ALIGLSIFIS VPTYERVFLP LARLITKKPS GITMLQRIGA GMVLSSLNMV 420
  421 VAALVEMKRL ETAKEHGLVD RPDATIPMSI WWFVPQYLLL GMIDVFSLVG TQEFFYDQVP 480
  481 TELRSIGLAL SLSAMGLASF LSGFLITVIN WATGKNGGDS WFNTNLNRAH VDYFYWLLAA 540
  541 FTAIGFLAFL LLSRLYVYRR VDQV