YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9759581, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFLIFLLE VYKVVIAVVA SIVFFVFSGL TLAGTAVGLT VTTPLFIIFS PILVPATIAI  60
   61 TLLTTGFTTG GALGATAIAL IRRGMGVKSK NNIPAIGAPP TMFAQFSLTP KINYEGTFKG 120
  121 SWGGKSSPQA TPNFSYGGTW TANWGGRSFT GKFGDQSGGG STAGGSTPEA AGAGAGAAAA 180
  181 GAGAAAAAGA AAAAVPGLGA ASAGAGPGAG AGTPAPAPTG KAGKAGSKKK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.83
Transmembrane Helix	14	37	0.88
Non-Cytoplasmic	38	55	0.65
Transmembrane Helix	56	80	0.88
Cytoplasmic	81	171	0.88
Transmembrane Helix	172	195	0.77
Non-Cytoplasmic	196	197	0.46
Transmembrane Helix	198	220	0.47
Cytoplasmic	221	230	0.56