YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1B4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL  60
   61 ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF SLVTHPFSLV FLLCLLASWL 120
  121 FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG 180
  181 AFRAPEDLFL DEQEPAATGF LSFLGGAASS AAPAVIAARV

Type	Start	End	Confidence
Cytoplasmic	1	84	0.89
Transmembrane Helix	85	103	0.78
Non-Cytoplasmic	104	106	0.63
Transmembrane Helix	107	125	0.90
Cytoplasmic	126	144	0.75
Transmembrane Helix	145	178	0.82
Non-Cytoplasmic	179	195	0.70
Transmembrane Helix	196	218	0.89
Cytoplasmic	219	220	0.71