YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18398448, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.85
Transmembrane Helix	9	29	0.88
Cytoplasmic	30	45	0.82
Transmembrane Helix	46	65	0.92
Non-Cytoplasmic	66	71	0.82
Transmembrane Helix	72	94	0.91
Cytoplasmic	95	104	0.83
Transmembrane Helix	105	127	0.81
Non-Cytoplasmic	128	143	0.83
Transmembrane Helix	144	165	0.90
Cytoplasmic	166	233	0.87
Transmembrane Helix	234	254	0.83
Non-Cytoplasmic	255	273	0.75
Transmembrane Helix	274	294	0.79
Cytoplasmic	295	308	0.73
Transmembrane Helix	309	330	0.88
Non-Cytoplasmic	331	341	0.69
Transmembrane Helix	342	362	0.77
Cytoplasmic	363	370	0.69
Transmembrane Helix	371	394	0.89
Non-Cytoplasmic	395	396	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFWSLLEVA SMPVIQVLFM SLVGAFMASD RCKLFPVEAR NSMNKVVFVL FAPALMFANL  60
   61 AQTVTLEDII SWWFMPVNMG LTFLIGGLLG WLVVKILKPP PYLEGLIVAT CSAGNMGNLP 120
  121 IILVPAICDE DKSPFGNRSV CRTVGLSYAS FSMALGGFYI WTYTFRLIKG SAMKVQAIEE 180
  181 SEKIAIKSSN SDLEADHKTH LLGAPEDKEN KVVKEKTGFW RKGVDFLHEI LEELLAPPTL 240
  241 GAIIGFIFGA VRWLRNLIIG DDAPLRIVQS TAKLLGDGTI PCMTIILGGN LIQGLRSSAV 300
  301 KPMVVLGIVC VRYIAMPIIG IGIVLTAANL GFLPADPLFQ YVLMLQFTLP PAMNIGTMTQ 360
  361 LYNVAQDECS VLMLWTYLVA ILALTVWSTI FLHLLV