YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTPA2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDHIHEHDH MVQICGEVSS GETSLVGIKK TCGEAPCGFS DAKTSSIEAQ ERAASMRKLL  60
   61 IAVLLCAIFI VVEVVGGIKA NSLAILTDAA HLLSDVAAFA ISLFSLWASG WKANPQQSYG 120
  121 FFRIEILGAL VSIQMIWLLA GILVYEAIVR LNNGSGEVEG SLMFAVSAVG LLVNIAMAIL 180
  181 LGHDHGHGHG HSHDNGHGHS HDHGHGIAAT EHHHDSGHDE SQLSDVLIEQ KKQRNVNIQG 240
  241 AYLHVLGDSI QSVGVMIGGA IIWYKPEWKI LDLICTLVFS VIVLGTTIGM LRNILEVLME 300
  301 STPREIDPTM LEKGVCEIEE VVAVHELHIW AITVGKLLLA CHVKIRPEAE ADMVLDKIID 360
  361 YIKREHNISH VTIQIERQ

Type	Start	End	Confidence
Cytoplasmic	1	58	0.98
Transmembrane Helix	59	80	0.91
Non-Cytoplasmic	81	88	0.82
Transmembrane Helix	89	111	0.88
Cytoplasmic	112	120	0.90
Transmembrane Helix	121	145	0.83
Non-Cytoplasmic	146	160	0.87
Transmembrane Helix	161	182	0.93
Cytoplasmic	183	240	0.97
Transmembrane Helix	241	263	0.88
Non-Cytoplasmic	264	269	0.81
Transmembrane Helix	270	291	0.92
Cytoplasmic	292	378	0.91