YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS15_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.19
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEATKMVN GGVKSKSPKG SPDFLGYNLR YVKLGYIYLL SLSRTFCFFL PPLLLLFIFV  60
   61 SRFLPILAFP LSTFFILLIY HYLTPSSVFL LDFSCYRPPD HLKITKSDFI ELAMKSGNFN 120
  121 ETAIELQRKV LDQSGIGEES YMPRVVFKPG HRVNLRDGRE EAAMVIFGAI DELLAATKIN 180
  181 VKHIKILVLN CGVLNTTPSL SAMVINHYKL RHNTESYNLG GMGCSAGVIA IDLAKDLLNA 240
  241 HQGSYALVVS TEIVSFTWYS GNDVALLPPN CFFRMGAAAV MLSSRRIDRW RAKYQLMQLV 300
  301 RTHKGMEDTS YKSIELREDR DGKQGLYVSR DVMEVGRHAL KANIATLGRL EPSFEHICVL 360
  361 ASSKKVLDDI HKDLKLTEEN MEASRRTLER FGNTSSSSIW YELAYLEHKA KMKRGDRVWQ 420
  421 IGFGSGFKCN SVVWKALKNI DPPRHNNPWN L

Type	Start	End	Confidence
Cytoplasmic	1	33	0.63
Transmembrane Helix	34	60	0.74
Non-Cytoplasmic	61	62	0.37
Transmembrane Helix	63	84	0.82
Cytoplasmic	85	185	0.52
Transmembrane Helix	186	200	0.19
Non-Cytoplasmic	201	451	0.54