YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRFSNTVIG VLNLLTLLAS IPIIGTALYK ARSSTTCENF LQTPLLVIGF IILIVSLAGF  60
   61 IGACFNVAWA LWVYLVVMIF LIATLMGLTL FGLVVTSQGG GVEVPGRIYK EYRLGDYHPW 120
  121 LRERVRDPEY WNSIRSCILS SKTCTKIESW TTLDYFQRDM TSVQSGCCKP PTACTYEAGV 180
  181 VDGGGDCFRW NNGVEMLCYE CDACKAGVLE EIRLDWRKLS VVNILVLVLL IAVYAAGCCA 240
  241 FHNTRHAAHP YHPSDDNRMT RVRPRWDYYW WRWWHEKKEQ LY

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.83
Transmembrane Helix	8	29	0.93
Cytoplasmic	30	42	0.76
Transmembrane Helix	43	64	0.91
Non-Cytoplasmic	65	70	0.61
Transmembrane Helix	71	95	0.87
Cytoplasmic	96	220	0.89
Transmembrane Helix	221	244	0.86
Non-Cytoplasmic	245	282	0.90