YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9294149
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHAYYAMQID THTHSCASDF VCNKISKDKK ILMSLQRPNG NSSSSSSHKK HKTEESDEEL  60
   61 LMVPDMEAAG STCVLSSSAD DGVNNPELDQ TQNGVSTAKR RRGRNPVDKE YRSLKRVSAQ 120
  121 QARERKKVYV SDLESRANEL QNNNDQLEEK ISTLTNENTM LQRSEEKNNY EEMENFGEGR 180
  181 RSGGGMLPLL ALSAVAEYYR LPWKPPVTAS LLAANTLVYL RPAFIDPVIP HISEVWFNPH 240
  241 LIFKHKDLKR LFLSAFYHVN EPHLVYNMMS LLWKGIKLET SMGSSEFASM VFTLIGMSQG 300
  301 VTLLLAKSLL LLFDYDRAYY NEYAVGFSGV LFAMKVVLNS QAEDYSSVYG ILVPTKYAAW 360
  361 AELILVQMFV PNASFLGHLG GILAGIIYLK LKGSYSGSDP VTMAVRGVSR LVTWPLRFLN 420
  421 GMVRSRRRRI TGRGRVGRGQ TGIAGPGIWR CQSCTYDNSG WLSACEMCGS GRARGNGWSL 480
  481 NQGPALSSSN DLPLDELRRR RVERFS

Type	Start	End	Confidence
Non-Cytoplasmic	1	286	0.53
Transmembrane Helix	287	311	0.77
Cytoplasmic	312	318	0.56
Transmembrane Helix	319	338	0.57
Non-Cytoplasmic	339	367	0.56
Transmembrane Helix	368	389	0.78
Cytoplasmic	390	506	0.78