YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	3HID2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METQYPKLIE PSKTRIGWIG IGIMGSAMVS HILAAGYSVT VYARDLRKTK DLQTKGGRTA  60
   61 NSPKELGEMS DVVFTIVGNS NDVRSLLLGD DGVLSGLKPG GVTVDMTSSK PGLAREIYAE 120
  121 ARRRDCWAVD APVSGGDAGA REGKLTIFAG GDSEIVEWLA PVMKTMGIVR FMGGAGSGQS 180
  181 CKIGNQICVG SNMIGLAEGI VFAEKAGLDP VKWLEAVKDG AAGSAVMRLF GEMMAVRDYK 240
  241 ATGFAEYMVK DLGMAAEAAM AMPGTALNKQ LFTVMVANGD GKLGFQGVVD VIRRLNGLS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.83
Transmembrane Helix	16	37	0.89
Non-Cytoplasmic	38	299	0.88