YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS16_ARATH
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYPMKKVKI FFNYLMAHRF KLCFLPLMVA IAVEASRLST QDLQNFYLYL QNNHTSLTMF  60
   61 FLYLALGSTL YLMTRPKPVY LVDFSCYLPP SHLKASTQRI MQHVRLVREA GAWKQESDYL 120
  121 MDFCEKILER SGLGQETYVP EGLQTLPLQQ NLAVSRIETE EVIIGAVDNL FRNTGISPSD 180
  181 IGILVVNSST FNPTPSLSSI LVNKFKLRDN IKSLNLGGMG CSAGVIAIDA AKSLLQVHRN 240
  241 TYALVVSTEN ITQNLYMGNN KSMLVTNCLF RIGGAAILLS NRSIDRKRAK YELVHTVRVH 300
  301 TGADDRSYEC ATQEEDEDGI VGVSLSKNLP MVAARTLKIN IATLGPLVLP ISEKFHFFVR 360
  361 FVKKKFLNPK LKHYIPDFKL AFEHFCIHAG GRALIDEMEK NLHLTPLDVE ASRMTLHRFG 420
  421 NTSSSSIWYE LAYTEAKGRM TKGDRIWQIA LGSGFKCNSS VWVALRNVKP STNNPWEQCL 480
  481 HKYPVEIDID LKE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.71
Transmembrane Helix	20	36	0.78
Non-Cytoplasmic	37	53	0.85
Transmembrane Helix	54	74	0.68
Cytoplasmic	75	213	0.74
Transmembrane Helix	214	231	0.56
Non-Cytoplasmic	232	493	0.60