YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.99
Transmembrane Helix	63	83	0.94
Non-Cytoplasmic	84	89	0.82
Transmembrane Helix	90	110	0.95
Cytoplasmic	111	130	0.93
Transmembrane Helix	131	153	0.94
Non-Cytoplasmic	154	174	0.93
Transmembrane Helix	175	196	0.93
Cytoplasmic	197	235	0.96
Transmembrane Helix	236	255	0.89
Non-Cytoplasmic	256	286	0.84
Transmembrane Helix	287	312	0.83
Cytoplasmic	313	412	0.72
Transmembrane Helix	413	435	0.89
Non-Cytoplasmic	436	441	0.57
Transmembrane Helix	442	465	0.87
Cytoplasmic	466	476	0.48
Transmembrane Helix	477	510	0.66
Non-Cytoplasmic	511	529	0.50
Transmembrane Helix	530	553	0.90
Cytoplasmic	554	586	0.52
Transmembrane Helix	587	609	0.76
Non-Cytoplasmic	610	626	0.54
Transmembrane Helix	627	651	0.82
Cytoplasmic	652	660	0.58
Transmembrane Helix	661	687	0.60
Non-Cytoplasmic	688	714	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGVLNPDR DRQIVEHELQ ETGFSPETEK VKNKNFEEDE EEEDESVEKI FESREVPSWK  60
   61 KQLTVRAFVV SFMLSILFSF IVMKLNLTTG IIPSLNVSAG LLGFFFVKTW TKMLHRSGLL 120
  121 KQPFTRQENT VIQTCVVASS GIAFSGGFGT YLFGMSERIA TQSGDVSRGV KDPSLGWIIG 180
  181 FLFVVSFLGL FSVVPLRKIM VIDFKLTYPS GTATAHLINS FHTPQGAKLA KKQVRVLGKF 240
  241 FSLSFFWSFF QWFFTGGENC GFSNFPTFGL KAYQYKFYFD FSATYVGVGM ICPYIINISV 300
  301 LLGGILSWGI MWPLIETKKG DWFPDNVPSS SMHGLQAYKV FIAVAIILGD GLYNFCKVLS 360
  361 RTLSGLFVQL RGPTTSISRT SFTLEEDPHA SPLSPKQSYD DQRRTRFFLK DQIPTWFAVG 420
  421 GYITIAATST AILPHMFHQL RWYYILVIYI CAPVLAFCNA YGAGLTDWSL ASTYGKLAIF 480
  481 TIGAWAGSEH GGMLAGLAAC GVMMNIVSTA SDLTQDFKTG YLTLSSPKSM FVSQVIGTAM 540
  541 GCVVSPCVFW LFYKAFDDLG LPNTEYPAPF ATVYRSMAKL GVEGVASLPR ECLVLCYAFF 600
  601 GVAILVNIVK DSLHSNWGRF IPLPMAMAIP FFLGPYFAID MCVGSLILFI WERVDAAKAE 660
  661 AFGTAVASGL ICGDGIWSLP SSVLAIAGVN PPVCMKFLSS ATNSKVDNFL KGSI