YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10176776, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNLLNIEKD PIRVLITGAA GNIGYAIAPM IARGIMLGPD QPMILHLLDI EPASSSLEAV  60
   61 KMELQDSAFP LLKGVIATTN VVEACKDVNI VIMIGGFPRI AGMERKDVMS KNVVIYKAQA 120
  121 SALERYASDD CKVLVVANPA NTNALILKEF APSIPEENIT CLTRLDHNRA LAQLADKLSV 180
  181 PVSSVKNVIV WGNHSSTQYP DTNHATVSTK TGDRPLKELV TDHNWLKNEF IVEVQQRGAA 240
  241 VLRARKQSSA FSAAGAACDH IRDWFLGTPK GTWVSMGVCS DGSYGIPPGL VYSFPVICEK 300
  301 GSWKIVQGLS IDEFSREKMD DSARELAEEK DLAYSCLNV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.53
Transmembrane Helix	14	32	0.57
Non-Cytoplasmic	33	339	0.94