YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25411052, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	57	0.84
Non-Cytoplasmic	58	66	0.80
Transmembrane Helix	67	89	0.85
Cytoplasmic	90	106	0.86
Transmembrane Helix	107	129	0.94
Non-Cytoplasmic	130	149	0.91
Transmembrane Helix	150	172	0.86
Cytoplasmic	173	179	0.76
Transmembrane Helix	180	200	0.93
Non-Cytoplasmic	201	208	0.74
Transmembrane Helix	209	231	0.93
Cytoplasmic	232	251	0.96
Transmembrane Helix	252	270	0.89
Non-Cytoplasmic	271	289	0.76
Transmembrane Helix	290	311	0.84
Cytoplasmic	312	328	0.80
Transmembrane Helix	329	352	0.89
Non-Cytoplasmic	353	372	0.86
Transmembrane Helix	373	394	0.80
Cytoplasmic	395	402	0.72
Transmembrane Helix	403	424	0.88
Non-Cytoplasmic	425	431	0.73
Transmembrane Helix	432	453	0.92
Cytoplasmic	454	476	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPFLPQDE QIVPCKATWK SGQLNVELKK VSRLAVPMAT VTIAQYLLPV ISVMVAGHNG  60
   61 ELQLSGVALA TSFTNVSGFS IMFGLVGSLE TLSGQAYGAK QYEKMGTYTY SAISSNIPIC 120
  121 VLISILWIYM EKLLISLGQD PDISRVAGSY ALRLIPTLFA HAIVLPLTRF LLAQGLVLPL 180
  181 LYFALTTLLF HIAVCWTLVS ALGLGSNGAA LAISVSFWFF AMTLSCYVRF SSSCEKTRRF 240
  241 VSQDFLSSVK QFFRYGVPSA AMLCLEWWLF ELLILCSGLL QNPKLETSVL SICLTTATLH 300
  301 YVIPVGVAAA VSTRVSNKLG AGIPQVARVS VLAGLCLWLV ESSFFSILLF AFRNIIGYAF 360
  361 SNSKEVVDYV ADLSPLLCLS FVLDGFTAVL NGVARGCGWQ HIGALNNVVA YYLVGAPVGI 420
  421 YLAFSCELNG KGLWCGVVVG SAVQAIILAI VTASMNWKEQ VRAYYNTFFF FFNSLK