YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIS2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQRPATLS VYLYIPNIVG YMRVLLNCIA FSVCFSNKTL FSLLYFFSFC CDAVDGWCAR  60
   61 KFNQVSTFGA VLDMVTDRVS TACLLVILSQ IYRPSLVFLS LLALDIASHW LQMYSTFLSG 120
  121 KTSHKDVKDS TSWLFRLYYG NRMFMGYCCV SCEVLYIILL LIATNQTENL MNVVVKSLMQ 180
  181 ISPLSLLLAL SIFGWSIKQI INVIQMKTAA DVCVLYDIEK QHKKP

Type	Start	End	Confidence
Cytoplasmic	1	12	0.80
Transmembrane Helix	13	35	0.69
Non-Cytoplasmic	36	90	0.45
Transmembrane Helix	91	113	0.62
Cytoplasmic	114	142	0.62
Transmembrane Helix	143	164	0.92
Non-Cytoplasmic	165	176	0.62
Transmembrane Helix	177	197	0.89
Cytoplasmic	198	225	0.67