YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	41	0.93
Non-Cytoplasmic	42	83	0.95
Transmembrane Helix	84	105	0.88
Cytoplasmic	106	112	0.87
Transmembrane Helix	113	133	0.92
Non-Cytoplasmic	134	138	0.79
Transmembrane Helix	139	160	0.89
Cytoplasmic	161	169	0.88
Transmembrane Helix	170	192	0.88
Non-Cytoplasmic	193	203	0.77
Transmembrane Helix	204	223	0.95
Cytoplasmic	224	283	0.96
Transmembrane Helix	284	307	0.87
Non-Cytoplasmic	308	319	0.88
Transmembrane Helix	320	343	0.90
Cytoplasmic	344	349	0.95
Transmembrane Helix	350	372	0.86
Non-Cytoplasmic	373	388	0.77
Transmembrane Helix	389	411	0.89
Cytoplasmic	412	426	0.86
Transmembrane Helix	427	446	0.93
Non-Cytoplasmic	447	453	0.76
Transmembrane Helix	454	475	0.92
Cytoplasmic	476	514	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGAFVSEG GGGGRSYEGG VTAFVIMTCI VAAMGGLLFG YDLGISGGVT SMEEFLTKFF  60
   61 PQVESQMKKA KHDTAYCKFD NQMLQLFTSS LYLAALVASF MASVITRKHG RKVSMFIGGL 120
  121 AFLIGALFNA FAVNVSMLII GRLLLGVGVG FANQSTPVYL SEMAPAKIRG ALNIGFQMAI 180
  181 TIGILVANLI NYGTSKMAQH GWRVSLGLAA VPAVVMVIGS FILPDTPNSM LERGKNEEAK 240
  241 QMLKKIRGAD NVDHEFQDLI DAVEAAKKVE NPWKNIMESK YRPALIFCSA IPFFQQITGI 300
  301 NVIMFYAPVL FKTLGFGDDA ALMSAVITGV VNMLSTFVSI YAVDRYGRRL LFLEGGIQMF 360
  361 ICQLLVGSFI GARFGTSGTG TLTPATADWI LAFICVYVAG FAWSWGPLGW LVPSEICPLE 420
  421 IRPAGQAINV SVNMFFTFLI GQFFLTMLCH MKFGLFYFFA SMVAIMTVFI YFLLPETKGV 480
  481 PIEEMGRVWK QHWFWKKYIP EDAIIGGHDD NNTN