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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: OST1A_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQSSVVDLL LLLLAIALLA TPAFSDLVLS KVERRIDVTS QIARVTKTLK VVNSGSESVS  60
   61 EFALTFPKFL GNNLAYLSVA PSEGKGKSKR TLVNLSVREA DQKGLPDSIS VYSVALPKPL 120
  121 SKGDTLTLEV VAAFTNVLQP FPEKITQGEI HLVMLQESAQ YLSPYAVESQ SLSIKLPNAR 180
  181 IESYTKFENT KLQGSELKYG PYKNLQSYSY SPIVVHFESK AAFAVAEKLV REIEVSHWGN 240
  241 VQVTENYNVV HRGAQLKGEF SRLDFQARPN PRGASAFRHL LARLPPRAHS IYYRDDIGNI 300
  301 STSEMKSDSK KTELLIEPRF PLFGGWKTFF TIGYGLPLTD FLFASEGKRF LNISFGSPIL 360
  361 DLVTEKLIVQ VVLPEGSKDI SVTTPFAVKQ SQEIKYSHLD IAGRPVVVLE KNNVVPDHNQ 420
  421 HIQVYYKFSN INLLSEPLML ISGFFILFIT CIIYTRADIS ISKSSPSYLA KLQWDEVLAT 480
  481 LQEVQSIVQK CLATHDKLEA SLRDLSRTGD IQTCKAARKS TDSLLKDLSK ELKPLLGFLQ 540
  541 SFPSASHISP KVEELVVKEK ELQEKLMAKH TTVVEGYEKK SSGRDIENRI ASQQQKIIAL 600
  601 RQEIEDLLEF IDEI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle