YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRHHDPNPF DEDEEIVNPF SKGGGRVPAA SRPVEYGQSL DATVDIPLDN MNDSSQKQRK  60
   61 LADWEAELRK KEMDIKRREE AIAKFGVQID DKNWPPFFPI IHHDIAKEIP VHAQKLQYLA 120
  121 FASWLGIVLC LVFNVIATMV CWIKGGGVKI FFLATIYALI GCPLSYVLWY RPLYRAMRTD 180
  181 SALKFGWFFF TYLIHIGFCI VAAIAPPIFF HGKSLTGVLA AIDVISDSLL AGIFYFIGFG 240
  241 LFCLESLLSL WVLQKIYLYF RGNK

Type	Start	End	Confidence
Cytoplasmic	1	119	0.99
Transmembrane Helix	120	142	0.90
Non-Cytoplasmic	143	149	0.78
Transmembrane Helix	150	170	0.95
Cytoplasmic	171	187	0.87
Transmembrane Helix	188	210	0.92
Non-Cytoplasmic	211	230	0.91
Transmembrane Helix	231	253	0.91
Cytoplasmic	254	264	0.94