YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTX_ARATH
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE  60
   61 SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK ALIVSWLEEA LTYEIWVGTE 120
  121 GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR 180
  181 LGEQKFLFED RPSSLDAFLL SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA 240
  241 SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM 300
  301 GGGSSDELEY EDEDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	197	0.67
Transmembrane Helix	198	216	0.57
Cytoplasmic	217	283	0.88
Transmembrane Helix	284	303	0.83
Non-Cytoplasmic	304	315	0.93