YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PT504_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	29	0.93
Non-Cytoplasmic	30	42	0.74
Transmembrane Helix	43	64	0.91
Cytoplasmic	65	77	0.82
Transmembrane Helix	78	99	0.91
Non-Cytoplasmic	100	105	0.75
Transmembrane Helix	106	125	0.92
Cytoplasmic	126	130	0.87
Transmembrane Helix	131	150	0.92
Non-Cytoplasmic	151	154	0.82
Transmembrane Helix	155	174	0.89
Cytoplasmic	175	192	0.81
Transmembrane Helix	193	211	0.96
Non-Cytoplasmic	212	228	0.89
Transmembrane Helix	229	251	0.90
Cytoplasmic	252	257	0.86
Transmembrane Helix	258	279	0.87
Non-Cytoplasmic	280	283	0.78
Transmembrane Helix	284	302	0.89
Cytoplasmic	303	309	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSAKKQTL FISTLIISWY SSNIGVLLLN KFLLSNYGFK FPIFLTMCHM SACAILSYIS  60
   61 IVFLKLVPLQ HLKSRSQFLK VATLSIVFCA SVVGGNISLR YLPVSFNQAV GATTPFFTAL 120
  121 FAYLMTFKRE AWVTYGALVP VVAGVVIASG GEPGFHWFGF IMCISATAAR AFKSVLQGIL 180
  181 LSSEGEKLNS MNLMLYMSPI AVIALLPVTL FMEPDVISVT LTLAKQHQYM WILLLVNSVM 240
  241 AYSANLLNFL VTKHTSALTL QVLGNAKGAV AVVISILIFQ NPVTVMGIGG YSITVLGVVA 300
  301 YGETKRRFR