YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3150404, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEATTKFP ESDLRPIPQP PDFHPAIIVP AQNTTLKFWQ LMVAGSIAGS VEHMAMFPVD  60
   61 TVKTHMQALR SCPIKPIGIR QAFRSIIKTD GPSALYRGIW AMGLGAGPAH AVYFSFYEVS 120
  121 KKFLSGGNPN NSAAHAISGV FATISSDAVF TPMDMVKQRL QIGNGTYKGV WDCIKRVTRE 180
  181 EGFGAFYASY RTTVLMNAPF TAVHFTTYEA VKRGLREMLP EHAVGAEDEE GWLIYATAGA 240
  241 AAGGLAAAVT TPLDVVKTQL QCQGVCGCDR FKSSSISDVF RTIVKKDGYR GLARGWLPRM 300
  301 LFHAPAAAIC WSTYETVKSF FQDLNGEANA A

Type	Start	End	Confidence
Cytoplasmic	1	93	0.80
Transmembrane Helix	94	114	0.83
Non-Cytoplasmic	115	132	0.83
Transmembrane Helix	133	151	0.73
Cytoplasmic	152	331	0.60