YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.80
Transmembrane Helix	21	40	0.93
Cytoplasmic	41	46	0.78
Transmembrane Helix	47	68	0.83
Non-Cytoplasmic	69	76	0.86
Transmembrane Helix	77	97	0.88
Cytoplasmic	98	111	0.77
Transmembrane Helix	112	134	0.91
Non-Cytoplasmic	135	142	0.89
Transmembrane Helix	143	167	0.86
Cytoplasmic	168	178	0.85
Transmembrane Helix	179	199	0.91
Non-Cytoplasmic	200	209	0.67
Transmembrane Helix	210	228	0.95
Cytoplasmic	229	245	0.82
Transmembrane Helix	246	273	0.79
Non-Cytoplasmic	274	293	0.71
Transmembrane Helix	294	314	0.70
Cytoplasmic	315	321	0.57
Transmembrane Helix	322	346	0.87
Non-Cytoplasmic	347	352	0.53
Transmembrane Helix	353	374	0.76
Cytoplasmic	375	384	0.45
Transmembrane Helix	385	409	0.85
Non-Cytoplasmic	410	785	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPKMLFCLP EGDALFNPLN TMFIQMACIL VFSQFFYLFL KPCGQAGPVA QILAGIVLSL  60
   61 LTIIRKVHEF FLQKDSASYY IFFSFLLRTA FVFLIGLEID LDFMKRNLKN SIVITLGSLV 120
  121 ISGIIWLPFL WFLIRFMQIK GDFLTFYLAF LITLSNTAAP VVIRSIIDWK LHTSEIGRLA 180
  181 ISCGLFIEIT NIFIYTIVLS FISGTMTADI FIYSFATGVI ILTNRFLASW LPKRNPKEKY 240
  241 LSKAETLAFI ILILIIALTI ESSNLNSTLF VFIIGLMFPR EGKTYRTLIQ RLSYPIHEFV 300
  301 LPVYFGYIGF RFSVNSLTKR HYLVLGMTVA LSLLGKLLGV LFACSFLKIP KQYWLFLSTM 360
  361 LSVKGHIGLV LLDSNLMYKK WFTPVVHDMF VAALVIMTLL SGVITSLLLR SQEKSFAHIK 420
  421 TSLELFDTTE ELRVLTCVYG VRHARGSISL VSALSGFSPG TSSSPFTPYL MHLIPLPKKR 480
  481 KTELLYHELD EDAGNSNGGD DEFGTNEGLE INDSIDSFTR DRKIMVRQVK LVAPMENMHE 540
  541 EICNATEDLR VSIVFLPFHK HQRIDGKTTN DGEVFRHMNR KVLKQAQCSI GIFVDRNITG 600
  601 FHQLHGSDSV QHVAALFFGG PDDREALSLC KWLTNNSQIH LTVIQFVADD SKTEKIVGDA 660
  661 VTKENNEVFL EIVSEDQTEN ETDRIFLEEF YHRFVTTGQV GFIEKRVSNG MQTLTILREI 720
  721 GEMYSLFVVG KNRGDCPMTS GMNDWEECPE LGTVGDFLAS SNMDVNASVL VVQRHRNSFD 780
  781 SFVDE