YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UTR1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.52
Transmembrane Helix	8	31	0.83
Cytoplasmic	32	49	0.53
Transmembrane Helix	50	69	0.92
Non-Cytoplasmic	70	81	0.51
Transmembrane Helix	82	105	0.78
Cytoplasmic	106	115	0.42
Transmembrane Helix	116	132	0.51
Non-Cytoplasmic	133	134	0.51
Transmembrane Helix	135	155	0.83
Cytoplasmic	156	169	0.63
Transmembrane Helix	170	186	0.71
Non-Cytoplasmic	187	212	0.73
Transmembrane Helix	213	231	0.82
Cytoplasmic	232	246	0.72
Transmembrane Helix	247	266	0.81
Non-Cytoplasmic	267	297	0.88
Transmembrane Helix	298	317	0.94
Cytoplasmic	318	332	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVHGSGFRR ILLLALCISG IWSAYIYQGV LQETLSTKRF GPDEKRFEHL AFLNLAQSVV  60
   61 CLIWSYIMIK LWSNAGNGGA PWWTYWSAGI TNTIGPAMGI EALKYISYPA QVLAKSSKMI 120
  121 PVMLMGTLVY GIRYTFPEYM CTFLVAGGVS IFALLKTSSK TISKLAHPNA PLGYALCSLN 180
  181 LAFDGFTNAT QDSIASRYPK TEAWDIMLGM NLWGTIYNMI YMFGLPQGIG FKAIQFCKLH 240
  241 PEAAWDILKY CICGAVGQNF IFMTISNFGS LANTTITTTR KFVSIVVSSV MSGNPLSLKQ 300
  301 WGCVSMVFGG LAYQIYLKWK KLQRVEKKKQ KS