YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELMSLIK VWVYAIISIS YCYYTSTRIK SGVFRLLSVL PVCVLFLVLP LFVSSVHFSG  60
   61 STAFFLSWLA NFKLILFSFD QGPLFPVPSN LSRFVCFTCF PIKLQQNPKP QNQMPKWGFA 120
  121 VKLAFFGVLL HMYEYKQHMS PTVLLVLYSL HIYLEYEILL APLKVLLSIS LWCDLEPHFN 180
  181 EPYLSTSLQD FWGRRWNLMV PAILRPAVYL PVRQMAGRKM NSDQALFLGV FASFLVSGVV 240
  241 HELIFFYFTR ESPTGEVTLF FVLHGVCTAA ECAAKRTRLV RRWKVSQMVS RLLTVGFVVM 300
  301 TGGWLFFPHL ARSGMIERLA DEAFLFIGFV KHKFFYLCRN QSLKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.54
Transmembrane Helix	8	25	0.74
Cytoplasmic	26	35	0.65
Transmembrane Helix	36	58	0.86
Non-Cytoplasmic	59	113	0.40
Transmembrane Helix	114	133	0.60
Cytoplasmic	134	224	0.61
Transmembrane Helix	225	245	0.95
Non-Cytoplasmic	246	256	0.71
Transmembrane Helix	257	274	0.90
Cytoplasmic	275	288	0.83
Transmembrane Helix	289	308	0.93
Non-Cytoplasmic	309	345	0.71