YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3152572, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIGLVKQG WKWMQSQKHM CSDACSAMRC FGEMIGGLVE RHWPLVCSGC GKLLGLLQLS  60
   61 VLYWKDCIFR GFHCSAKLGS AALLLIMWSC FLSLTSLSCL LYVLLSMGAA AAVVLNLGCT 120
  121 PGLFIVGLFG ILILWMYANF WITGTLFIVG GYLFSLNHAR VVVLVAGLYA MYCVKVRLGW 180
  181 LGLFLSINLA FLSNDILNCL LQWCDNLSEK PQHEEPKKPK ETIIEEDYSR EFEYPSVPVE 240
  241 DETETKIHEN KSSAKPTAPS TVVNTVKEIS SVKIVKIEES SSADEMKRIL NSLNHYEALG 300
  301 VPRHKKIDAA VLKKEYRKKA MLVHPDKNMG SPLASESFKK LQSAYEVVEL LIILNLYILK 360
  361 FLVLSDFVKK RDYDEQLRKE ESRTRSVCQT SHASSHQSGP DYRSDESRRI HCTKCGNSHI 420
  421 WICTNRTKAK ARWCQDCGQY HQAKDGDGWV ELKGTLPFER AHKIEIPRAF VCAESKIFDV 480
  481 SEWAICQGMA CRPNTHRPSF HVNMVGLEKT TQRSNSSRFP WDLDVEMMDE DEEEFELWLQ 540
  541 QALASGLFCE TSKRRKSWSP FKLGQMKSKK QWRRTST

Type	Start	End	Confidence
Cytoplasmic	1	42	0.80
Transmembrane Helix	43	62	0.69
Non-Cytoplasmic	63	80	0.68
Transmembrane Helix	81	105	0.86
Cytoplasmic	106	111	0.64
Transmembrane Helix	112	135	0.83
Non-Cytoplasmic	136	139	0.53
Transmembrane Helix	140	164	0.72
Cytoplasmic	165	172	0.50
Transmembrane Helix	173	192	0.74
Non-Cytoplasmic	193	577	0.89