YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB3C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	26	0.63
Non-Cytoplasmic	27	35	0.88
Transmembrane Helix	36	58	0.91
Cytoplasmic	59	77	0.98
Transmembrane Helix	78	100	0.89
Non-Cytoplasmic	101	115	0.83
Transmembrane Helix	116	137	0.91
Cytoplasmic	138	149	0.88
Transmembrane Helix	150	172	0.89
Non-Cytoplasmic	173	180	0.85
Transmembrane Helix	181	203	0.91
Cytoplasmic	204	322	0.97
Transmembrane Helix	323	344	0.85
Non-Cytoplasmic	345	363	0.86
Transmembrane Helix	364	386	0.83
Cytoplasmic	387	440	0.91
Transmembrane Helix	441	459	0.58
Non-Cytoplasmic	460	461	0.50
Transmembrane Helix	462	484	0.84
Cytoplasmic	485	541	0.54
Transmembrane Helix	542	559	0.58
Non-Cytoplasmic	560	560	0.17
Transmembrane Helix	561	575	0.73
Cytoplasmic	576	940	0.86
Transmembrane Helix	941	963	0.85
Non-Cytoplasmic	964	989	0.83
Transmembrane Helix	990	1012	0.86
Cytoplasmic	1013	1061	0.84
Transmembrane Helix	1062	1082	0.81
Non-Cytoplasmic	1083	1087	0.65
Transmembrane Helix	1088	1107	0.90
Cytoplasmic	1108	1179	0.91
Transmembrane Helix	1180	1201	0.84
Non-Cytoplasmic	1202	1207	0.68
Transmembrane Helix	1208	1228	0.74
Cytoplasmic	1229	1514	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLGSTTGS GTLAMLFSFS ESILPLDSRS FLLKPLFLRW LSGFLHSVLL LVLFFSWVRK  60
   61 KIRGDSGVTE SLKDRRDFGF KSALFCSLAL SLLNLVLMSL SGFYWYESGW LDNEQLVSSL 120
  121 GFLLGMVSWG VLSICLHRCR DCEHKKAPFL LRLWLVFYLV VSCYSLVVDF VMYERRETVP 180
  181 VHLLVFDIVA FIAAVFLGYV AVLKKDRSNS NGVLEEPLLN GGDSRVGGDD SVELNKTNGS 240
  241 GEATPYSRAG ILSLLTFSWM SPLIDIGNKK TLDLEDVPQL HDTDSVVGLA PKFRSMLESP 300
  301 DGGERSGVTT FKLIKALYFT AQWEILVTAF FAFIYTVASY VGPALIDTFV QYLNGRRQYN 360
  361 HEGYVLVITF FAAKIVECLS QRHWFFRLQK VGIRMRSALV AMIYEKGLTL SCQSKQGRTS 420
  421 GEIINFMTVD AERIGNFSWY MHDPWMVLLQ VGLALWILYR NLGLASIAAL VATIIVMLIN 480
  481 FPFGRMQERF QEKLMEAKDS RMKSTSEILR NMRILKLQGW EMKFLSKIFD LRKSEEGWLK 540
  541 KYVYNSAVIS FVFWGAPTLV SVSTFGACIL LGIPLESGKI LSALATFRIL QEPIYNLPDT 600
  601 ISMIVQTKVS LDRLASYLCL DNLQPDIVER LPKGSSDVAV EVINSTLSWD VSSSNPTLKD 660
  661 INFKVFPGMK VAVCGTVGSG KSSLLSSLLG EVPKVSGSLK VCGTKAYVAQ SPWIQSGKIE 720
  721 DNILFGKPME RERYDKVLEA CSLSKDLEIL SFGDQTVIGE RGINLSGGQK QRIQIARALY 780
  781 QDADIYLFDD PFSAVDAHTG SHLFKEVLLG LLCSKSVIYV THQVEFLPAA DLILVMKDGR 840
  841 ISQAGKYNDI LNSGTDFMEL IGAHQEALAV VDSVDANSVS EKSALGQENV IVKDAIAVDE 900
  901 KLESQDLKND KLESVEPQRQ IIQEEEREKG SVALDVYWKY ITLAYGGALV PFILLGQVLF 960
  961 QLLQIGSNYW MAWATPVSED VQAPVKLSTL MIVYVALAFG SSLCILLRAT LLVTAGYKTA1020
 1021 TELFHKMHHC IFRSPMSFFD STPSGRIMSR ASTDQSAVDL ELPYQFGSVA ITVIQLIGII1080
 1081 GVMSQVSWLV FLVFIPVVAA SIWYQRYYIA AARELSRLVG VCKAPLIQHF SETISGATTI1140
 1141 RSFSQEFRFR SDNMRLSDGY SRPKFYTAGA MEWLCFRLDM LSSLTFVFSL VFLVSIPTGV1200
 1201 IDPSLAGLAV TYGLSLNTLQ AWLIWTLCNL ENKIISVERI LQYASVPSEP PLVIESNRPE1260
 1261 QSWPSRGEVE IRDLQVRYAP HMPLVLRGIT CTFKGGLRTG IVGRTGSGKS TLIQTLFRIV1320
 1321 EPSAGEIRID GVNILTIGLH DLRLRLSIIP QDPTMFEGTM RSNLDPLEEY TDDQIWEALD1380
 1381 KCQLGDEVRK KEQKLDSSVS ENGDNWSMGQ RQLVCLGRVL LKRSKILVLD EATASVDTAT1440
 1441 DNLIQKTLRE HFSDCTVITI AHRISSVIDS DMVLLLSNGI IEEYDTPVRL LEDKSSSFSK1500
 1501 LVAEYTSRSS SSFD