YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POED2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELEIVWLV RGAWITVWIV SILPLVIASI PTSKLNSFRE LVLSFAGRGK ILHPSSQKFT  60
   61 IPQKCFAHFY VIGVVWTTLL LAATWMYACK MAPLSSEEFQ LSDIASRLAG GSDVFSVHKS 120
  121 NMTPVEHRFK VWRAVFLLLL MEIHVLRRLI ESFYVFKYSP SARMHILGYF AGLFFYVTAP 180
  181 LSLCSNIAPE VAGFVGNQVA EFIANGKSHT SAPEFNLLSS ISPLMKLGSL QWIGGAIFLW 240
  241 GWIHQRRCHA ILGSLRENPS QAKEYIIPYG DWFGMVSSPH FLAEIVLYAG LLIASGGTDI 300
  301 TIWLLFGFVA ANLTYAAGET HRWYLRKFEN YPANRHAIFP YVY

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.50
Transmembrane Helix	7	32	0.79
Cytoplasmic	33	65	0.50
Transmembrane Helix	66	89	0.89
Non-Cytoplasmic	90	128	0.55
Transmembrane Helix	129	146	0.58
Cytoplasmic	147	165	0.82
Transmembrane Helix	166	188	0.87
Non-Cytoplasmic	189	223	0.89
Transmembrane Helix	224	244	0.89
Cytoplasmic	245	264	0.92
Transmembrane Helix	265	292	0.67
Non-Cytoplasmic	293	299	0.56
Transmembrane Helix	300	318	0.86
Cytoplasmic	319	343	0.84