YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RER1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR  60
   61 NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD GDGGDENGNN DGGGNGGNGD 120
  121 GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK 180
  181 LFLLRYLDLQ GSVWPLGFLM RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG 240
  241 EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF 300
  301 EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP 360
  361 PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI PVVAMAFTVG VRFANNVYGG 420
  421 MQFVDWAKLS GVQ

Type	Start	End	Confidence
Cytoplasmic	1	185	0.52
Transmembrane Helix	186	200	0.22
Non-Cytoplasmic	201	248	0.61
Transmembrane Helix	249	272	0.62
Cytoplasmic	273	317	0.51
Transmembrane Helix	318	344	0.74
Non-Cytoplasmic	345	364	0.48
Transmembrane Helix	365	379	0.51
Cytoplasmic	380	399	0.66
Transmembrane Helix	400	416	0.46
Non-Cytoplasmic	417	433	0.54