YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GGPPB_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTLSSSSL FIQFRGRRYN SLSSFNNLQK RTVLSLSCAL SSQGGDMIPP EGKSNDRNSA  60
   61 FDFKSYMIRK AESVSAALNV SVPLQEPLTI QEAVRYSLLA GGKRVRPLLC IAACELVGGD 120
  121 EATAMSAACA VEMIHTSSLI HDDLPCMDDA DLRRGKPTNH KEFGEDMAVL AGDALLALAF 180
  181 EHMTFVSNGL VAPERMIRAV MELAKAIGTK GLVAGQVTDL CSQGLNPDDV GLERLEFIHL 240
  241 HKTAALLEAA AVLGAIMGGG TEEEIEKLRK YARCIGLLFQ VVDDILDVTE STKELGKTAG 300
  301 KDVMAGKLTY PRLIGLERSR EVAEKLRREA AEQLLGFDSD KAAPLVALAS YIACRHN

Type	Start	End	Confidence
Signal Peptide	1	44	0.83
N-region	1	35
H-region	36	41
C-region	42	44
Cleavage Site	44	45
Non-Cytoplasmic	45	357	0.98