YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AOX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYRSIYRTL RPVLSSSVQS SGLGIGGFRG HLISHLPNVR LLSSDTSSPV SGNNQPENPI  60
   61 RTADGKVIST YWGIPPTKIT KPDGSAWKWN CFQPWDSYKP DVSIDVTKHH KPSNFTDKFA 120
  121 YWTVQTLKIP VQLFFQRKHM CHAMLLETVA AVPGMVGGML LHLKSLRRFE HSGGWIKALL 180
  181 EEAENERMHL MTFIELSQPK WYERAIVFTV QGVFFNAYFL AYVISPKLAH RITGYLEEEA 240
  241 VNSYTEFLKD IDAGKFENSP APAIAIDYWR LPKDATLRDV VYVIRADEAH HRDINHYASD 300
  301 IQFKGHELKE APAPIGYH

Type	Start	End	Confidence
Cytoplasmic	1	142	0.48
Transmembrane Helix	143	163	0.74
Non-Cytoplasmic	164	318	0.53