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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT39_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTILFLAL FLSIVLNVQI SFVVAESKVY VVYLGEKEHD NPESVTESHH QMLWSLLGSK  60
   61 EAVLDSIVYS YRHGFSGFAA KLTESQAQQI SELPEVVQVI PNTLYEMTTT RTWDYLGVSP 120
  121 GNSDSLLQKA NMGYNVIVGV IDSGVWPESE MFNDKGFGPI PSRWKGGCES GELFNASIHC 180
  181 NRKLIGAKYF VDGLVAEFGV VNRTQNPEYL SPRDFAGHGT HVASTIGGSF LPNVSYVGLG 240
  241 RGTARGGAPG VHIAVYKACW SGYCSGADVL KAMDEAIHDG VDILSLSLGP SVPLFPETEH 300
  301 TSVGAFHAVA KGIPVVIAAG NAGPTAQTIS NVAPWVLTVA ATTQDRSFPT AITLGNNITI 360
  361 LGQAIYGGPE LGFVGLTYPE SPLSGDCEKL SANPNSTMEG KVVLCFAAST PSNAAIAAVI 420
  421 NAGGLGLIMA KNPTHSLTPT RKFPWVSIDF ELGTDILFYI RSTRSPIVKI QASKTLFGQS 480
  481 VSTKVATFSS RGPNSVSPAI LKPDIAAPGV NILAAISPNS SINDGGFAMM SGTSMATPVV 540
  541 SGVVVLLKSL HPDWSPSAIK SAIVTTAWRT DPSGEPIFAD GSSRKLADPF DYGGGLINPE 600
  601 KAVKPGLIYD MTTDDYVMYM CSVDYSDISI SRVLGKITVC PNPKPSVLDL NLPSITIPNL 660
  661 RGEVTLTRTV TNVGPVNSVY KVVIDPPTGI NVAVTPAELV FDYTTTKRSF TVRVSTTHKV 720
  721 NTGYYFGSLT WTDNMHNVAI PVSVRTQILQ RYYDEN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle