YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FRO1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.97
Transmembrane Helix	14	34	0.92
Non-Cytoplasmic	35	62	0.91
Transmembrane Helix	63	83	0.93
Cytoplasmic	84	110	0.95
Transmembrane Helix	111	136	0.85
Non-Cytoplasmic	137	167	0.93
Transmembrane Helix	168	189	0.93
Cytoplasmic	190	209	0.89
Transmembrane Helix	210	231	0.96
Non-Cytoplasmic	232	247	0.91
Transmembrane Helix	248	269	0.89
Cytoplasmic	270	280	0.85
Transmembrane Helix	281	305	0.83
Non-Cytoplasmic	306	436	0.62
Transmembrane Helix	437	453	0.50
Cytoplasmic	454	550	0.87
Transmembrane Helix	551	573	0.93
Non-Cytoplasmic	574	592	0.80
Transmembrane Helix	593	614	0.90
Cytoplasmic	615	704	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVGEMNKEV IDKVIKFLMM VILMGTIVIW IMMPTSTYKE IWLTSMRAKL GKSIYYGRPG  60
   61 VNLLVYMFPM ILLAFLGCIY LHLKKSTTVN QFNSGVEKKR AKFGALRRPM LVNGPLGIVT 120
  121 VTEVMFLTMF MALLLWSLAN YMYRTFVNVT SESAATDGNN LWQARLDLIA VRIGIVGNIC 180
  181 LAFLFYPVAR GSSLLAAVGL TSESSIKYHI WLGHLVMIIF TSHGLCYFIY WISKNQLVSK 240
  241 MLEWDRTAVS NLAGEIALVA GLMMWVTTYP KIRRRLFEVF FYSHYLYIVF MLFFVFHVGI 300
  301 SHALIPLPGF YIFLVDRFLR FLQSRNNVKL VSARVLPCDT VELNFSKNPM LMYSPTSTMF 360
  361 VNIPSISKLQ WHPFTIISSS KLEPETLSVM IKSQGKWSTK LYDMLSSSSS DQINRLAVSV 420
  421 EGPYGPSSTD FLRHESLVMV SGGSGITPFI SIVRDLFYMS STHKCKIPKM TLICAFKNSS 480
  481 DLSMLDLILP TSGLTTDMAS FVDIQIKAFV TREEKTSVKE STHNRNIIKT RHFKPNVSDQ 540
  541 PISPILGPNS WLCLAAILSS SFMIFIVIIA IITRYHIHPI DQNSEKYTWA YKSLIYLVSI 600
  601 SITVVTTSTA AMLWNKKKYY AKNDQYVDNL SPVIIESSPQ QLISQSTDIH YGERPNLNKL 660
  661 LVGLKGSSVG ILVCGPKKMR QKVAKICSFG SAENLHFESI SFSW