YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LRK16_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQGLHLIWV IFCLHLICIS SQQETEFIFN GFGQADLYTD GVAKILPNGL LQLTDGSGQK  60
   61 MGHAFFKKPF EFKSPRSFSF STHFVCALVP KPGFIGGHGI AFVLSASMDL TQADATQFLG 120
  121 LFNISTQGSP SSHLVAVELD TALSAEFDDI DANHVGIDVN SLMSIASTPA AYFSEIDGEN 180
  181 KSIKLLSGDP IQVWVDYGGN VLNVTLAPLK IQKPSRPLLS RSINLSETFP DRKFFLGFSG 240
  241 ATGTLISYQY ILGWSLSRNK VSLQTLDVTK LPRVPRHRAK NKGPSVVLIV LLILLAIIVF 300
  301 LALGAAYVYR RRKYAEIREE WEKEYGPHRF SYKDLYIATN GFNKDGLLGK GGFGKVYKGT 360
  361 LPSKGQIAVK RVSHDAEEGM KQFVAEIVSM GNLKHKNMVP LLGYCRRKGE LLLVSEYMPN 420
  421 GSLDQYLFND EKPPFSWRRR LLIIKDIATA LNYMHTGAPQ VVLHRDIKAS NVMLDTEFNG 480
  481 RLGDFGMARF HDHGKDPATT AAVGTIGYMA PELATVGACT ATDVYGFGAF LLEVTCGRRP 540
  541 VEPGLSAERW YIVKWVCECW KMASLLGARD PRMRGEISAE EVEMVLKLGL LCTNGVPDLR 600
  601 PSMEDIVQYL NGSLELPDIS PNSPGIGSFT PLIIGSNPPV SPSTKTFYTS SSANDSTFVT 660
  661 HSIIHGDGR

Type	Start	End	Confidence
Signal Peptide	1	21	0.82
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	233	0.92
Transmembrane Helix	234	254	0.83
Cytoplasmic	255	285	0.84
Transmembrane Helix	286	309	0.93
Non-Cytoplasmic	310	669	0.89